computer science

Using Language Modeling to Predict DNA Shapes

Your DNA contains the genetic blueprint necessary to not just build your body but to build the proteins and molecules that ensure your body’s functionality. DNA encodes RNA, RNA encodes proteins and voila, your body functions. 

But the biological reality of this process is much more complex. The shapes, twists and entanglements of your DNA and RNA— their topology — influence their functionality and your health. Damage to DNA, like radiation exposure leading to double-strand breaks, can cause mutations that develop into diseases like cancer.

Joining Us: Chris Jones

Chris studies theoretical computer science, with a focus on convex optimization, on random matrices, and on connections between theoretical computer science, pure mathematics, and statistical physics (e.g. sphere packing, spin glasses). Prior to coming to Davis, he was a postdoc at Bocconi University in Milan, and he received his Ph.D. in 2022 from the University of Chicago. Chris also likes designing crossword puzzles and puzzle hunts. On his days off, he likes to enjoy nature and swim in alpine lakes.

GGAM Update, 2024

During the 2023-2024 academic year, my second year as chair, I focused on getting the new degree requirements approved and on adapting the Group to the new budgetary challenges that the University is facing. 

Branching Out

With the anticipation of Data Science activities in full swing at UC Davis, in Fall 2020, our campus decided to renovate the first floor and basement of the former Physical Sciences and Engineering Library (PSEL) for the use of campus-wide Data Science and Artificial Intelligence (AI) related activities. The renovation was finally completed in December 2023.